MmuALTA0007328-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026193 | Fn1
Description
fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
Coordinates
chr1:71597642-71598463:-
Coord C1 exon
chr1:71598374-71598463
Coord A exon
NA
Coord C2 exon
chr1:71597642-71597672
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTTGGATGTTCCCTCCACAGTTC
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTCTGGAGCCAGGAACCGAGTACACCATCTACGTCATTGCCCTGAAGAACAATCAGAAGAGTGAGCCCCTGATTGGGAGGAAGAAGACAG
Seq A exon
NA
Seq C2 exon
TTCAAAAGACCCCCTTCATCACCAACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026193-74-88,74-87,74-86-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=NA C2=0.812
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
NA
C2:
PF0004116=fn3=PU(51.4=28.2)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAACCGAGTACACCATC
R:
GGTTGGTGATGAAGGGGGTCT
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types