MmuALTA0007869-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000064263 | Platr26
Description
pluripotency associated transcript 26 [Source:MGI Symbol;Acc:MGI:2686477]
Coordinates
chr2:71719417-71723496:+
Coord C1 exon
chr2:71719417-71719508
Coord A exon
chr2:71723290-71723292
Coord C2 exon
chr2:71723293-71723496
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TTGTTGTTGTTGACCAGAAGCAG
3' ss Score
-2.1
Exon sequences
Seq C1 exon
TTTCAGAGATGCAGTGACTCTGCCAGATGCTTCAGTGTCTCCCAGGAGGCAGGTTTTGCAGTGCATGGAGAGGAACCAGCTGGCAGAGAAAG
Seq A exon
CAG
Seq C2 exon
GTTCAAGCTCAAGCAGCAATCAGATCATGTAGAATGACCACAGCCAAATGCACAAGCCCATTTGAGAAGCAAGGGAATGTCTTGTGTGATCCCAGAATCCCAGGTCCCGGGAAGACAGAAATGTTGCTGAGACCCCGTGGCAGCTTGGGTTCAAGCAAGACAAAGCTGCAGCCAACAGGGCTGCCATCTTCTCACTCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064263-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTGCATGGAGAGGAAC
R:
AAATGGGCTTGTGCATTTGGC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types