MmuALTA0007869-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000064263 | Platr26
Description
pluripotency associated transcript 26 [Source:MGI Symbol;Acc:MGI:2686477]
Coordinates
chr2:71719417-71723496:+
Coord C1 exon
chr2:71719417-71719508
Coord A exon
chr2:71723287-71723292
Coord C2 exon
chr2:71723293-71723496
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TTGTTGTTGTTGTTGACCAGAAG
3' ss Score
4.88
Exon sequences
Seq C1 exon
TTTCAGAGATGCAGTGACTCTGCCAGATGCTTCAGTGTCTCCCAGGAGGCAGGTTTTGCAGTGCATGGAGAGGAACCAGCTGGCAGAGAAAG
Seq A exon
AAGCAG
Seq C2 exon
GTTCAAGCTCAAGCAGCAATCAGATCATGTAGAATGACCACAGCCAAATGCACAAGCCCATTTGAGAAGCAAGGGAATGTCTTGTGTGATCCCAGAATCCCAGGTCCCGGGAAGACAGAAATGTTGCTGAGACCCCGTGGCAGCTTGGGTTCAAGCAAGACAAAGCTGCAGCCAACAGGGCTGCCATCTTCTCACTCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064263-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTGCATGGAGAGGAAC
R:
AAATGGGCTTGTGCATTTGGC
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types