MmuALTA0008530-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107626535-107627440:+
Coord C1 exon
chr11:107626535-107626714
Coord A exon
chr11:107627350-107627379
Coord C2 exon
chr11:107627380-107627440
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTTGCACCATTTATTTCAGCAG
3' ss Score
4.83
Exon sequences
Seq C1 exon
ACAGTGGGACGAGCAGTTGGATCCTCGGCTAAATGCAAAGCAGAAAGAAGCTGTTCTGGCCATCACCACTCCACTCTCCATCCAGCTGCCGCCTGTCCTCATCATTGGACCCTACGGGACGGGCAAAACCTTCACTCTGGCTCAGGCGGCCAAGCACATACTGCAGCAGCAGGAGACCAG
Seq A exon
CAGGATTCTCATTTGCACCCATTCTAATAG
Seq C2 exon
TGCTGCTGACCTCTACATAAAGGATTATTTACATCCATATGTAGAAGCAGGCAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721-29-28,29-27,29-26-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(26.3=83.6)
A:
NA
C2:
PF130861=AAA_11=FE(17.6=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGCAAAACCTTCACTCTG
R:
CTGGGGATTGCCTGCTTCTAC
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types