MmuEX0022721 @ mm10
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107626535-107632350:+
Coord C1 exon
chr11:107626535-107626714
Coord A exon
chr11:107627353-107627454
Coord C2 exon
chr11:107632172-107632350
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCACCATTTATTTCAGCAGGAT
3' ss Score
5.8
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACAGTGGGACGAGCAGTTGGATCCTCGGCTAAATGCAAAGCAGAAAGAAGCTGTTCTGGCCATCACCACTCCACTCTCCATCCAGCTGCCGCCTGTCCTCATCATTGGACCCTACGGGACGGGCAAAACCTTCACTCTGGCTCAGGCGGCCAAGCACATACTGCAGCAGCAGGAGACCAG
Seq A exon
GATTCTCATTTGCACCCATTCTAATAGTGCTGCTGACCTCTACATAAAGGATTATTTACATCCATATGTAGAAGCAGGCAATCCCCAGGCAAGACCTCTCAG
Seq C2 exon
GGTGTATTTCCGGAATCGCTGGGTGAAGACTGTCCACCCAGTCGTGCATCAGTACTGCTTGATCTCGAGCACACAGTCCACCTTTCAGATGCCCCAGAAGGAAGATATTCTTAAACATCGAGTGGTGGTGGTCACACTGAGCACTTCCCAGTACCTCTGCCAGCTGGACCTGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721_MULTIEX3-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(26.3=83.6)
A:
PF130861=AAA_11=FE(17.6=100)
C2:
PF130861=AAA_11=PD(48.0=59.0),PF130861=AAA_11=PU(43.5=60.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGGATCCTCGGCTAA
R:
TGGACTGTGTGCTCGAGATCA
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types