DreEX0037282 @ danRer10
Exon Skipping
Gene
ENSDARG00000030560 | helz
Description
helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
Coordinates
chr3:60751448-60755546:+
Coord C1 exon
chr3:60751448-60751627
Coord A exon
chr3:60753187-60753288
Coord C2 exon
chr3:60755368-60755546
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCCGCTGTTTCAGGGT
3' ss Score
10.88
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCAGTGGGACGAGCAGCTGGATCCGCGTCTGAATGCCAAGCAGAAGGAGGCGATTCTGGCCATCACCACCCCGCTCTCCATCAACCTCCCGCCGGTGCTCATCATCGGGCCCTACGGCACCGGCAAGACCTTCACGCTGGCCCAGGCTGTCAAACACATCCTCAAGCAGCCCGAGTCACG
Seq A exon
GGTTCTGATCTGCACACATTCGAACAGCGCCGCCGATTTGTATATTAAAGATTACCTTCATCCTTACGTGGAGGCGGGAAATCCACACGCACGACCTCTCAG
Seq C2 exon
GGTTTACTTCAGGAACCGCTGGGTGAAGACGGTCCACCCGCTGGTGCAGCAGTACTGCCTGATCTCCGGAGCGCACTTCACCTTCCAGATGCCCACGCGGCAGGACGTGGAGCGCCACCGTGTGGTCGTGGTCACGCTCAGCACATCCCAGTACCTCTGCCAGCTCGACCTGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030560-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(44.3=83.6)
A:
PF130861=AAA_11=FE(29.6=100)
C2:
PF130861=AAA_11=PD(25.2=47.5),PF130861=AAA_11=PU(42.9=59.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCCAAGCAGAAGGAGG
R:
GGGCATCTGGAAGGTGAAGTG
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]