HsaEX0029677 @ hg19
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:16878]
Coordinates
chr17:65147162-65157192:-
Coord C1 exon
chr17:65157013-65157192
Coord A exon
chr17:65156377-65156478
Coord C2 exon
chr17:65147162-65147340
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCACCATTTATTTCAGCAGGAT
3' ss Score
5.8
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACAATGGGATGAACAGTTGGATCCTCGACTAAATGCAAAACAGAAAGAGGCTGTTCTGGCCATTACCACTCCACTTGCAATCCAGCTGCCGCCTGTGCTTATCATCGGACCCTATGGGACAGGCAAAACGTTCACTCTAGCTCAGGCTGTCAAACATATTCTGCAGCAACAGGAGACTAG
Seq A exon
GATTCTCATTTGCACCCATTCTAATAGTGCTGCTGATCTCTACATAAAGGATTATTTACATCCATATGTAGAAGCAGGCAATCCCCAGGCAAGACCTCTCAG
Seq C2 exon
GGTATATTTCAGAAATCGCTGGGTAAAGACTGTCCACCCAGTTGTGCATCAGTACTGTTTGATCTCAAGCGCACATTCCACCTTTCAGATGCCCCAGAAAGAAGATATTCTTAAACATCGAGTGGTGGTTGTTACCTTGAATACTTCCCAGTACCTCTGTCAGTTGGACCTTGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(42.5=83.6)
A:
PF130861=AAA_11=FE(28.3=100)
C2:
PF130861=AAA_11=PD(28.3=55.7),PF130861=AAA_11=PU(42.9=59.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGAACAGTTGGATCCTCG
R:
GGTGGAATGTGCGCTTGAGAT
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)