GgaEX0026418 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7197491-7203876:+
Coord C1 exon
chr18:7197491-7197670
Coord A exon
chr18:7198190-7198291
Coord C2 exon
chr18:7203698-7203876
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCACCATTTATTCCAGCAGGAT
3' ss Score
5.94
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACAATGGGATGAGCAGTTGGACCCTCGGCTAAATGCTAAGCAGAAAGAGGCTGTTCTGGCTATCACTACCCCACTTTCAATACAACTGCCTCCTGTTCTTATCATCGGTCCCTATGGGACAGGAAAAACGTTCACGCTGGCTCAGGCAGTCAAGCACATACTGCAACAACAGGATACTAG
Seq A exon
GATTCTCATTTGCACCCATTCTAATAGTGCTGCTGATCTCTACATAAAGGATTATTTACATCCATATGTAGAAGCAGGCAATCCCCAGGCAAGACCTCTCAG
Seq C2 exon
GGTATATTTCAGAAATCGCTGGGTAAAGACTGTCCACCCAGTTGTGCATCAGTACTGTTTGATTTCAAGCACACATTCCACCTTTCAGATGCCACAGAAAGAAGATATTCTTAAGCAACGAGTAGTAGTTGTTACTTTAAATACATCACAGTATCTGTGTCAACTGGATCTTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-'16-18,'16-17,17-18
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(41.8=83.6)
A:
PF130861=AAA_11=FE(28.7=100)
C2:
PF130861=AAA_11=PD(28.7=57.4),PF130861=AAA_11=PU(44.2=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCGGCTAAATGCTAAGC
R:
CTGTGGCATCTGAAAGGTGGA
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]