MmuALTA0009539-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25892474-25893223:+
Coord C1 exon
chr2:25892474-25892557
Coord A exon
chr2:25893093-25893161
Coord C2 exon
chr2:25893162-25893223
Length
69 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
CTCTGCTTGTTATGCATCAGGGT
3' ss Score
5.97
Exon sequences
Seq C1 exon
GTCTTCTGGCCACCTCTGCGGAACCTGTTCATCCCCGTGTTTCTCAACTGCTGGCTGGCCAAGCATGCGCTGGAGAACATGATT
Seq A exon
GGTGTCTGTGGGTTCTGATGGCTGCATTCTCTGCAGAATGACTTCCACCGTGCCATCCTACGCACACAG
Seq C2 exon
TCAGCCATGTTCAACCAGGTGCTCATCCTGTTCTGCACCCTGCTGTGCCTGGTCTTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-13-23,13-22,13-21-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0788511=Ion_trans_2=PU(13.6=34.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCTGGCCACCTCTGC
R:
GTGAAGACCAGGCACAGCAG
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types