MmuALTA0009575-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029475 | Kdm2b
Description
lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
Coordinates
chr5:122882216-122882488:-
Coord C1 exon
chr5:122882402-122882488
Coord A exon
chr5:122882225-122882233
Coord C2 exon
chr5:122882216-122882224
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ATTGTTGTTCTCTCTTTTTGGCC
3' ss Score
3.91
Exon sequences
Seq C1 exon
ATTAAGGAATCGGAGGGTGTGGTCAACGATGAGCTTCCCAACTGCTGGGAGTGTCCGAAGTGTAACCATGCCGGCAAGACCGGGAAA
Seq A exon
GCCTACAAG
Seq C2 exon
CAAAAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029475-62-42,62-41,62-40-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.998
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(12.1=24.1),PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types