Special

MmuALTA0009575-4/4 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000029475 | Kdm2b
Description
lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
Coordinates
chr5:123331977-123332497:-
Coord C1 exon
chr5:123332411-123332497
Coord A exon
chr5:123332177-123332242
Coord C2 exon
chr5:123331977-123332176
Length
66 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ATTGTTGTTCTCTCTTTTTGGCC
3' ss Score
3.91
Exon sequences
Seq C1 exon
ATTAAGGAATCGGAGGGTGTGGTCAACGATGAGCTTCCCAACTGCTGGGAGTGTCCGAAGTGTAACCATGCCGGCAAGACCGGGAAA
Seq A exon
GCCTACAAGCAAAAGCGTGGCCCTGGCTTTAAGTATGCCTCCAACCTGCCTGGCTCCTTGCTCAAG
Seq C2 exon
GAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAAGAGCCTGCCAAGCGGAGAAGTGAGTGTGAAGAGGCTCCCCGTCGGAGGTCAGACGAGCACCCCAAAAAGGTGCCTGCAGATGGCATCCTCCGCCGAAAGTCTGATGATGTGCACCTGAGGAGGAAGCGGAAATACGAGAAGCCCCAAGAGCTGAGTGGACGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029475-41-33,41-32,41-31,41-30-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.040 A=NA C2=0.998
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0013017=C1_1=PD(12.1=24.1),PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000038229





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000031435, ENSMUSP00000083376, ENSMUSP00000114049, ENSMUSP00000114052, ENSMUSP00000119746
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:121882085-121882086 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr17:56008757-56008758 
Chicken
(galGal4)
chr15:5477606-5477607 
ALTERNATIVE
GgaALTA0002092-4/5
(KDM2B)
Chicken
(galGal3)
chr15:5530212-5530213 
Zebrafish
(danRer10)
chr8:40212404-40212405 
ALTERNATIVE
DreALTA0014993-2/3
(kdm2ba)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AACGATGAGCTTCCCAACTGC

				
R: 
TTTTTGGGGTGCTCGTCTGAC

				
Band lengths: 
167-233

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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