GgaALTA0002092-4/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5477336-5478212:-
Coord C1 exon
chr15:5478126-5478212
Coord A exon
chr15:5477554-5477605
Coord C2 exon
chr15:5477336-5477553
Length
52 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTGTGTTTTGTGTCTCTTTGGCG
3' ss Score
1.27
Exon sequences
Seq C1 exon
GTGAAGGAATCAGATGGTGTGGTTAATGACGAGCTGCCGAACTGCTGGGAGTGTCCAAAGTGCAACCATGCAGGGAAAACTGGAAAA
Seq A exon
GCGTACAAGCAAAAGCGCGGACCAGGATTCAAATACGCATCAAATCTCCCAG
Seq C2 exon
GCTCATTGCTGAAGGAACAGAAAATGAACAGAGACAATAAGGAAGTAACAGATGCTGCAAAACGGAAAGGGGACTGTGAAGAAACTCCCAGGCGGAAATCTGAGGAACATTCCAAAAAGCCTCAAGTTGACTCAATTCTGAGGAGAAAGTCAGACGAAGTACATCTGCGGAGGAAAAGGAAATTTGAGAAACCCCAGGAACCCTCTATGAGAAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225-60-56,60-55,60-54,60-53,60-52-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.922
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGTCCAAAGTGCAACCA
R:
GTTCCTCAGATTTCCGCCTGG
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]