GgaEX0005619 @ galGal4
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5474044-5478212:-
Coord C1 exon
chr15:5478126-5478212
Coord A exon
chr15:5477336-5477596
Coord C2 exon
chr15:5474044-5474717
Length
261 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCTTTGGCGTACAAGCAA
3' ss Score
0.49
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTGAAGGAATCAGATGGTGTGGTTAATGACGAGCTGCCGAACTGCTGGGAGTGTCCAAAGTGCAACCATGCAGGGAAAACTGGAAAA
Seq A exon
CAAAAGCGCGGACCAGGATTCAAATACGCATCAAATCTCCCAGGCTCATTGCTGAAGGAACAGAAAATGAACAGAGACAATAAGGAAGTAACAGATGCTGCAAAACGGAAAGGGGACTGTGAAGAAACTCCCAGGCGGAAATCTGAGGAACATTCCAAAAAGCCTCAAGTTGACTCAATTCTGAGGAGAAAGTCAGACGAAGTACATCTGCGGAGGAAAAGGAAATTTGAGAAACCCCAGGAACCCTCTATGAGAAAACGG
Seq C2 exon
CGGCGATCGTGGAAGGCTTCGGATGAGCGGACCGCCCTGCTCAAACCCCTGCGGCGCCTCAAACAGGAGCCGGAGGACGAGCTGCCGGAAGCACCTCCCCGGTCCAAGGACAGCGACCAGTCGCGATCCAGCTCGCCCACCGCGGGTCCCAGCACAGAGGGGGCCGAGCCCAGGGACAAGAAGAAGTTCAAGATGAGGCGGAAAAGGCGGCTTCCCAATAAGGAACTGAGCAAGGAGCTCAGCAAGGAGCTCAACCAAGAGATCCAAAAAACCGAGAATAGCCTTGCCAATGAGAATCACCAACCCATCAAATCTGAACCCGAGAGCGAAAACGAGGAACCCAAGCGCGCCTTGAACAACAGCGAGAGACTCCATAGGTTCAGCAAAGGGTTGAACGGGACTCCCCGGGAGCTGAGGCACCCGCTCATCCCCAGCCTGCGGAGCACGCCGCGGGGCATCGCCCGGCCCCCGCCCTCGCTCTCCCCTCCCAAATGCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX1-9/13=8-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.922 C2=0.818
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NO
C2:
PF0064628=F-box=PU(77.6=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTAATGACGAGCTGCC
R:
CCTTATTGGGAAGCCGCCTTT
Band lengths:
293-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]