BtaEX6072555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:56008501-56009332:+
Coord C1 exon
chr17:56008501-56008587
Coord A exon
chr17:56008768-56009028
Coord C2 exon
chr17:56009219-56009332
Length
261 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTTGGCCTACAAGCAA
3' ss Score
2.31
5' ss Seq
CGAGTACGC
5' ss Score
4.62
Exon sequences
Seq C1 exon
ATTAAGGAGTCAGAGGGCGTGGTCAACGATGAGCTTCCAAACTGCTGGGAGTGTCCCAAGTGTAACCACGCCGGCAAGACCGGGAAA
Seq A exon
CAAAAGCGTGGCCCTGGCTTTAAGTACGCCTCCAACCTGCCTGGCTCCCTGCTCAAGGAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAGGAGCCTGCCAAGCGGAGGAGTGAGTGTGAGGAGGCGCCCCGGCGCAGGTCCGACGAGCACCCCAAGAAGGTGCCCCCCGACGGCATCCTGCGCCGAAAGTCGGACGACGTGCACCTGAGGCGGAAGCGGAAATACGAGAAGCCCCAGGAGCTGAGTGGACGCAAGCGA
Seq C2 exon
GCCTCGACGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGCCTCAGCCCCTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328-'36-26,'36-25,37-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=1.000 C2=0.921
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(35.4=79.3),PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGGAGTCAGAGGGCGTGG
R:
TGCTGCTGGAAGTAAGTGAGAC
Band lengths:
199-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]