DreEX6089627 @ danRer10
Exon Skipping
Gene
ENSDARG00000046010 | kdm2bb
Description
lysine (K)-specific demethylase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080225-13]
Coordinates
chr10:41915068-41920092:-
Coord C1 exon
chr10:41920006-41920092
Coord A exon
chr10:41919210-41919485
Coord C2 exon
chr10:41915068-41915852
Length
276 bp
Sequences
Splice sites
3' ss Seq
TGCACCTTTTGGCCACAAAGCAA
3' ss Score
1.43
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GATAAGGATGCTGGTGGTGTTGTGAATGACGAGTTACCAAATTGCTGGGAGTGTCCGAAATGCAATCATGCTGGAAAGACAGGGAAA
Seq A exon
CAAAAAAGAGGCCCAGGGTTTAAATACGCCTCCAATCTCCCTGGATCTCTGCTCAAAGAGCAGCGAACATTGATAAAGGAAGAACCGGACATGTCAACCGAGACCACTGCTGTTTCACCCATCACGAAGAGGAAGACGGAACATGAGGACAACCCAACCTGCAAGTCAGAAGACGCACTAAAGAAACGTTCCCCCAAACTGGAGGACAACCCGCTTCGCAAGAAGAGAAAACTCTTCGAAAAGGACTCAGACTCCAATTCCATCATCAGGAAAAAG
Seq C2 exon
AAGAAGCGCACCAATCCTGATGATCTCTCAACCTCTTTGATCCTGGGACACATCAAGAAGGAAAGAGAGGACGATGAGGAGTACGAGGAGCAAAACCAACCAGAAAGAAGCTTTGTGCCCTCAGAGGAAGAGGATGGTGATGATGAAAGAGATGAAGAGGAAGAAGAAAAAGCGTTAAGTAGCCGAAAAGAAAATGGGAAAGTTTCACATAAGACATTGGAAAGTGACCAATCACAAGGCGGATTAACCCAGGCGGGTCCCTCTAGCACTGACGCACAGTCAAAAAGCCAGCGAAAACCCAAACGTAAACCTCGACTGCCCAATAAAGAACTGAGTAAAGAGCTGAGCAAACAACTGAACCAGGAGATCCAAAAGACTGAGGATCGCCTGGCACATCAGAATGGCAGGACGGTTAAGACTGAACCCAGTAGTGACGGAGAGGACAGAAAACCACTGAATAATGGCAGCAGTCATCTTCGGGATTGGCTGGGGCCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000046010-'24-21,'24-20,25-21=AN
Average complexity
A_S
Mappability confidence:
88%=75=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.880 C2=0.817
Domain overlap (PFAM):
C1:
PF0030115=Rubredoxin=PD(60.0=93.1)
A:
NO
C2:
PF0064628=F-box=PU(77.6=17.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGTGTCCGAAATGCAA
R:
CCTGGGTTAATCCGCCTTGTG
Band lengths:
296-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]