RnoEX0046419 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39149424-39150277:+
Coord C1 exon
chr12:39149424-39149510
Coord A exon
chr12:39149694-39149948
Coord C2 exon
chr12:39150164-39150277
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTTTGGCCTACAAGCAAAAGCGT
3' ss Score
-9.3
5' ss Seq
CGAGTACGA
5' ss Score
3.61
Exon sequences
Seq C1 exon
ATTAAGGAATCAGAGGGTGTGGTCAACGATGAGCTTCCCAACTGCTGGGAGTGTCCGAAGTGTAACCATGCCGGCAAGACCGGGAAA
Seq A exon
CGTGGCCCTGGCTTTAAGTATGCCTCCAACTTGCCTGGCTCCTTGCTCAAGGAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAGGAGCCTGCCAAGCGGAGGAGTGAGTGTGAAGAGGCCCCCCGTCGCAGGTCAGACGAGCACCCCAAGAAGGTGCCTACAGATGGCATCCTCCGCCGAAAGTCTGACGATGTGCACCTGAGGAGGAAGCGGAAATACGAGAAGCCCCAAGAGCTGAGTGCACGCAAGCGA
Seq C2 exon
GCCTCGACGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGTCTCAGCCCTTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702-'29-21,'29-20,30-21
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.989 C2=0.921
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(35.4=79.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATCAGAGGGTGTGGTCA
R:
TGCTGCTGGAAGTAAGTGAGAC
Band lengths:
196-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]