MmuALTA0009771-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000030154 | Klrb1f
Description
killer cell lectin-like receptor subfamily B member 1F [Source:MGI Symbol;Acc:MGI:2442965]
Coordinates
chr6:129003201-129003884:+
Coord C1 exon
chr6:129003201-129003275
Coord A exon
NA
Coord C2 exon
chr6:129003809-129003884
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTTGTTTCTCAAATTTCCAGACC
3' ss Score
8.33
Exon sequences
Seq C1 exon
TGAGATTCCTAGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGCTCAAGAGAACAGGACTGAACTAACAG
Seq A exon
NA
Seq C2 exon
ACCTTGGGCAGAAGGTCGAGATGCCTGCTCTATGGAAGACGCCATTTTGTTGCTCATTGAAAATAAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030154-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(14.8=86.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCCTAGTGCAAAAACCACCA
R:
TTTCAATGAGCAACAAAATGGCGT
Band lengths:
135-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: