MmuEX0025826 @ mm9
Exon Skipping
Gene
ENSMUSG00000030154 | Klrb1f
Description
killer cell lectin-like receptor subfamily B member 1F [Source:MGI Symbol;Acc:MGI:2442965]
Coordinates
chr6:129002477-129003884:+
Coord C1 exon
chr6:129002477-129002575
Coord A exon
chr6:129003201-129003275
Coord C2 exon
chr6:129003730-129003884
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCTTATTTACTAGTGA
3' ss Score
7.71
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGCTTGTCGGTGCCCACACTGGCATCATTTGGCTCTGAAATCTGGCTGTGCTGGGCTGATCCTTCTTCTCTTGAGCCTGATTGGACTCAGTGTCTTAG
Seq A exon
TGAGATTCCTAGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGCTCAAGAGAACAGGACTGAACTAACAG
Seq C2 exon
GAAGATCAGCCATACTAGAGTGCCCGAGATATTGGCATCCACACTGGAACAAATGTTTATTTGTTTCTCAAATTTCCAGACCTTGGGCAGAAGGTCGAGATGCCTGCTCTATGGAAGACGCCATTTTGTTGCTCATTGAAAATAAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030154_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGAAATCTGGCTGTGCT
R:
CATCTCGACCTTCTGCCCAAG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: