BtaEX6024038 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012029 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr5:100954020-100957216:+
Coord C1 exon
chr5:100954020-100954118
Coord A exon
chr5:100955185-100955259
Coord C2 exon
chr5:100957062-100957216
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGTGTTTCTTTATTTACCAGTGA
3' ss Score
6.26
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATCTTTGTCAGGGTCCACGTTGGCATAACTTTCCCCTGAAATTTAGTTGTGCTGTGATTATACTTCTTGCCTTGACTGTGACTGGGTTGAGTGTTTCAG
Seq A exon
TGATATTCATAAGACAAAACACATCAGTAGAAAAAACCAGCATGGATGCTCAAGAGAACAGGAAGGAAGCAACAG
Seq C2 exon
AGAGACCAGTTCTGTTAACGTGTCCAATGCACTGGAAACGAATCCGAGATAAATGCTTATATTTTAGTGAAACTTCCAAACCTTGGAATGATAGTCTAGCTGACTGTTCCACAAGAGAATCCAGTCTACTGCTTATTCAAGATCAGGAAGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012029-'1-4,'1-2,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.288 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Skipping Isoform:
ENSBTAT00000015955fB3724
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCCTTGACTGTGACTGG
R:
GCAGTAGACTGGATTCTCTTGTGG
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]