RnoEX0047514 @ rn6
Exon Skipping
Gene
ENSRNOG00000057410 | Klrb1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:RGD Symbol;Acc:1587563]
Coordinates
chr4:162787829-162789893:+
Coord C1 exon
chr4:162787829-162787918
Coord A exon
chr4:162789151-162789225
Coord C2 exon
chr4:162789739-162789893
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTCTTGCTTGCTAGTGG
3' ss Score
5.88
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGCCTGTTGGGGATCAGGCTGGCACCGGGTGGCTCTGAAACTTGGCTGTGTTGGGCTGATCCTTCTTCTAATGGGACTCAGTGTCTTAG
Seq A exon
TGGGATTCTTGGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGTTCAAGAGAACAAGACTGAACCAACAG
Seq C2 exon
TGAGATCAACCATTCTAGAGTGCCCAAGAGATTGGCATTTGCACTGGAATAAATGCTTATTTATTTCTCAAACTTCCAGACCTTGGGCTGAAGGTCTCGCTGACTGTTCTTTGAGAGGAGCCACTTTGCTGCTCATTGGAGATGGAAAAGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057410-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149271=Neurensin=FE(23.8=100)
A:
PF149271=Neurensin=FE(19.8=100)
C2:
PF149271=Neurensin=PD(38.1=92.3),PF0005916=Lectin_C=PU(26.5=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTTGGGCTGATCCTTC
R:
CAGCAAAGTGGCTCCTCTCAA
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]