HsaEX6065120 @ hg19
Exon Skipping
Gene
ENSG00000111796 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:6373]
Coordinates
chr12:9751095-9754195:-
Coord C1 exon
chr12:9754097-9754195
Coord A exon
chr12:9752363-9752437
Coord C2 exon
chr12:9751095-9751249
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCCTTATGTACTAGTGA
3' ss Score
6.61
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGTCTGTCAGGGTTCACCTTGGCATCAATTTGCCCTGAAACTTAGCTGTGCTGGGATTATTCTCCTTGTCTTGGTTGTTACTGGGTTGAGTGTTTCAG
Seq A exon
TGACATCCTTAATACAGAAATCATCAATAGAAAAATGCAGTGTGGACATTCAACAGAGCAGGAATAAAACAACAG
Seq C2 exon
AGAGACCGGGTCTCTTAAACTGCCCAATATATTGGCAGCAACTCCGAGAGAAATGCTTGTTATTTTCTCACACTGTCAACCCTTGGAATAACAGTCTAGCTGATTGTTCCACCAAAGAATCCAGCCTGCTGCTTATTCGAGATAAGGATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111796-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCTGGGATTATTCTCCT
R:
CAGGCTGGATTCTTTGGTGGA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)