MmuEX6007332 @ mm10
Exon Skipping
Gene
ENSMUSG00000079298 | Klrb1b
Description
killer cell lectin-like receptor subfamily B member 1B [Source:MGI Symbol;Acc:MGI:107539]
Coordinates
chr6:128818913-128821040:-
Coord C1 exon
chr6:128820942-128821040
Coord A exon
chr6:128820265-128820336
Coord C2 exon
chr6:128818913-128819067
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTCTTATCACCAGTGC
3' ss Score
8.92
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACACCTGTCGGTGCCCTCGCTGGCATCGGTTGGCTCTGAAATTTGGCTGTGCTGGCCTCATCCTTCTTGTGCTGGTCGTGATTGGACTCTGTGTCTTGG
Seq A exon
TGCTATCAGTACAAAAATCATCAGTACAAAAAATCTGCGCGGATGTTCAAGAGAACAGAACACATACAACAG
Seq C2 exon
GTTGTTCAGCTAAGCTAGAGTGCCCACAAGACTGGCTTTCACACCGAGATAAGTGCTTTCACGTTTCTCAAGTTTCCAACACTTGGAAGGAATGTCGAATTGATTGTGATAAAAAAGGAGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079298-'1-2,'1-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(0.1=0.0)
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGCTGGTCGTGATTGGA
R:
AGCAGCAAAGTGGCTCCTTTT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types