MmuALTA0009952-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026943 | Lcn12
Description
lipocalin 12 [Source:MGI Symbol;Acc:MGI:1924951]
Coordinates
chr2:25347761-25348027:-
Coord C1 exon
chr2:25347951-25348027
Coord A exon
NA
Coord C2 exon
chr2:25347761-25347801
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GCCCTGGTGCTGTCCCTCAGACA
3' ss Score
7.86
Exon sequences
Seq C1 exon
GGGCAAGCACTGCAACACTTGGTCCTATACCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAG
Seq A exon
NA
Seq C2 exon
ACAGACAAGCAGCCAGAACATCACAAGGGTCAGCCTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026943-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.8=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(28.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCAACACTTGGTCCTA
R:
TGACCCTTGTGATGTTCTGGC
Band lengths:
103-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: