HsaALTA0004718-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000184925 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:28733]
Coordinates
chr9:139848152-139848416:+
Coord C1 exon
chr9:139848152-139848231
Coord A exon
NA
Coord C2 exon
chr9:139848376-139848416
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
GCCCTGATGCTGTCCCGCAGACA
3' ss Score
9.78
Exon sequences
Seq C1 exon
AGGCCAGCACTGTGACACATGGTCTTATGTGCTGATACCGGCAGCCCAGCCTGGGCAGTTCACTGTGGACCACGGTGTGG
Seq A exon
NA
Seq C2 exon
ACACACGAGCAGGCTGGCCGTCCTCAGGATCAGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184925-7-22,7-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(55.1=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(8.2=28.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCACTGTGACACATGGT
R:
AGGCTGATCCTGAGGACGG
Band lengths:
113-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)