HsaEX0035514 @ hg19
Exon Skipping
Gene
ENSG00000184925 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:28733]
Coordinates
chr9:139848152-139849949:+
Coord C1 exon
chr9:139848152-139848231
Coord A exon
chr9:139848376-139848416
Coord C2 exon
chr9:139848606-139849949
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCCCTGATGCTGTCCCGCAGACA
3' ss Score
9.78
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGGCCAGCACTGTGACACATGGTCTTATGTGCTGATACCGGCAGCCCAGCCTGGGCAGTTCACTGTGGACCACGGTGTGG
Seq A exon
ACACACGAGCAGGCTGGCCGTCCTCAGGATCAGCCTGCTGG
Seq C2 exon
GCAGGAGCTGGTTGCTGCCTCCCGGGACGCTGGACCAGTTCATCTGCCTGGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCCCAGATGTGACTGGTAACATGGTTCACCTGCAGGCATGCTGGGCAGTAGGCACGGGGCCCGCAGGAATGAGTTTGGTTGACCCTAGAGGAGCTGGACCCAGTGTCTACCCAGGGAGCTCAGCCCCAGCCTGCGCTCAGGGGTCTCCAGGCTCCTGGGTCCCTGTGCTCAACCCAGGCTCTGAGCCACCTCCTGCCGCCCCGGGTCCCCTGTCCTGGGCCACCTCCTCCCACCCCGGGTCTCCTGTCCCGGGCCACCTCCTCCCGCCCCAGGTCCCCTGTCCCGGGCCACCTCCCCCTGCCCCTCCCGCCCCAGGTCCCCTGTCCCGGCCCACCTCCTCCCACCCCGGGTCTCCTGTCCTGGGCTACCTCCTCCCACCCCAGGTCCCCTGTCCCGGGCCATCTCCTCCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184925-'7-23,'7-22,8-23
Average complexity
S*
Mappability confidence:
86%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.123 C2=0.020
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(55.1=100)
A:
PF0006118=Lipocalin=PD(8.2=28.6)
C2:
PF0006118=Lipocalin=FE(23.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCACTGTGGACCACGG
R:
TGCAGGTGAACCATGTTACCA
Band lengths:
146-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)