MmuEX6099552 @ mm9
Exon Skipping
Gene
ENSMUSG00000026943 | Lcn12
Description
lipocalin 12 [Source:MGI Symbol;Acc:MGI:1924951]
Coordinates
chr2:25347528-25348027:-
Coord C1 exon
chr2:25347951-25348027
Coord A exon
chr2:25347761-25347883
Coord C2 exon
chr2:25347528-25347629
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGACATGTGTGTCCCTCAGGGT
3' ss Score
9.98
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGCAAGCACTGCAACACTTGGTCCTATACCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAG
Seq A exon
GGTCAGGGCCTGGGGCAGACAGAGAGAATATACAGGTCATAGAGACAGACTACATCACGTTTGCCCTGGTGCTGTCCCTCAGACAGACAAGCAGCCAGAACATCACAAGGGTCAGCCTTCTGG
Seq C2 exon
GTAGAAACTGGAGACTTTCTCATAAGACAATAGACAAGTTCATCTGCCTGACCAGGACCCAAAACCTCACAAAGGATAACTTCCTCTTTCCTGATTTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026943-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.8=100)
A:
PF0006118=Lipocalin=FE(28.1=100)
C2:
PF0006118=Lipocalin=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCAACACTTGGTCCTA
R:
CACTCAAATCAGGAAAGAGGAAGT
Band lengths:
173-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: