BtaEX6047643 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039531 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:HGNC:28733]
Coordinates
chr11:106277392-106277867:-
Coord C1 exon
chr11:106277788-106277867
Coord A exon
chr11:106277592-106277708
Coord C2 exon
chr11:106277392-106277493
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGACGAGGCTGCCTCGCCAGAGC
3' ss Score
1.12
5' ss Seq
TGTGTGAGC
5' ss Score
2.62
Exon sequences
Seq C1 exon
GGGCCAGCGCTGTGTCACCTGGTCATATGAGCTTATTTCGCAGTCCCAGCCTGGGACGTTCTCGGTGGATCACAGTGGAG
Seq A exon
AGCCCGGGGCGGACCCCGAGGAGATCCAAGTGTATGACACGGACTACGCGTCCTTCGCCCTCCTACTCTCCAAAAAGCAGTCGGACCTGCAGAGGATCCTCAGGGTCAGCCTGCTGT
Seq C2 exon
GCAGAATATGGGCTATTCAGACCCAGGTGCTGGACAAGTTCGTCTGCCTGGTCCGAGCTCAGGGCCTCTCGGATGACAGCATCGTCTTTCCAGACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039531-'6-8,'6-5,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.118 C2=0.123
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(18.5=100)
A:
PF0006118=Lipocalin=FE(26.9=100)
C2:
PF0006118=Lipocalin=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCTGTGTCACCTGG
R:
CTGTCAGGTCTGGAAAGACGA
Band lengths:
178-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]