HsaEX0035514 @ hg38
Exon Skipping
Gene
ENSG00000184925 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:HGNC:28733]
Coordinates
chr9:136953700-136954255:+
Coord C1 exon
chr9:136953700-136953779
Coord A exon
chr9:136953924-136953964
Coord C2 exon
chr9:136954154-136954255
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCCCTGATGCTGTCCCGCAGACA
3' ss Score
9.78
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGGCCAGCACTGTGACACATGGTCTTATGTGCTGATACCGGCAGCCCAGCCTGGGCAGTTCACTGTGGACCACGGTGTGG
Seq A exon
ACACACGAGCAGGCTGGCCGTCCTCAGGATCAGCCTGCTGG
Seq C2 exon
GCAGGAGCTGGTTGCTGCCTCCCGGGACGCTGGACCAGTTCATCTGCCTGGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCCCAGATGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184925_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.123 C2=0.015
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(18.6=100)
A:
NO
C2:
PF0006118=Lipocalin=FE(23.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTATGTGCTGATACCGGC
R:
GACGATGTTGTCATCCGAGAGG
Band lengths:
146-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development