MmuEX6099552 @ mm10
Exon Skipping
Gene
ENSMUSG00000026943 | Lcn12
Description
lipocalin 12 [Source:MGI Symbol;Acc:MGI:1924951]
Coordinates
chr2:25492008-25492507:-
Coord C1 exon
chr2:25492431-25492507
Coord A exon
chr2:25492241-25492281
Coord C2 exon
chr2:25492008-25492109
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCCCTGGTGCTGTCCCTCAGACA
3' ss Score
7.86
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGCAAGCACTGCAACACTTGGTCCTATACCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAG
Seq A exon
ACAGACAAGCAGCCAGAACATCACAAGGGTCAGCCTTCTGG
Seq C2 exon
GTAGAAACTGGAGACTTTCTCATAAGACAATAGACAAGTTCATCTGCCTGACCAGGACCCAAAACCTCACAAAGGATAACTTCCTCTTTCCTGATTTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026943-'6-10,'6-9,7-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.8=100)
A:
PF0006118=Lipocalin=FE(28.1=100)
C2:
PF0006118=Lipocalin=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCAACACTTGGTCCTA
R:
GTGAGGTTTTGGGTCCTGGTC
Band lengths:
141-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types