MmuALTA0010628-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:126721099-126721541:-
Coord C1 exon
chr10:126721391-126721541
Coord A exon
chr10:126721269-126721271
Coord C2 exon
chr10:126721099-126721268
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTCTATGTACCCTTTCTCAGCAG
3' ss Score
5.58
Exon sequences
Seq C1 exon
CCCTGTGTCCTGAGTGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCAACTTCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
Seq A exon
CAG
Seq C2 exon
GTGATCTGTCTTCACTGGCCAGCAGCCCTGGAGCCCTCCCCAGCCTGTTGCAGCCTCCTGGCCCTCTTCTTTCCAGCCAGTTAGGGCTGCAGCTCCTCCCTGGGGGGGGAGCGCCTCCCGCCCTGTCAGAGGCTTCTAGTCCCCTAGCCTGCCTGCTACAGAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-10-13,10-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCCTCTCTGGGCAA
R:
GCTGGCCAGTGAAGACAGATC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: