MmuALTA0010628-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:126721099-126721541:-
Coord C1 exon
chr10:126721391-126721541
Coord A exon
NA
Coord C2 exon
chr10:126721099-126721268
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TATGTACCCTTTCTCAGCAGGTG
3' ss Score
8.4
Exon sequences
Seq C1 exon
CCCTGTGTCCTGAGTGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCAACTTCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
Seq A exon
NA
Seq C2 exon
GTGATCTGTCTTCACTGGCCAGCAGCCCTGGAGCCCTCCCCAGCCTGTTGCAGCCTCCTGGCCCTCTTCTTTCCAGCCAGTTAGGGCTGCAGCTCCTCCCTGGGGGGGGAGCGCCTCCCGCCCTGTCAGAGGCTTCTAGTCCCCTAGCCTGCCTGCTACAGAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-10-13,10-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCCTCTCTGGGCAA
R:
GCTGGCCAGTGAAGACAGATC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: