RnoALTA0023433-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006209 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:RGD Symbol;Acc:1311050]
Coordinates
chr7:70573564-70574001:-
Coord C1 exon
chr7:70573848-70574001
Coord A exon
chr7:70573709-70573733
Coord C2 exon
chr7:70573564-70573708
Length
25 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGACTGTAATTTCTCAACAGGTG
3' ss Score
10.29
Exon sequences
Seq C1 exon
CCCTGTGTCCTGAGTGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCTCAACTTCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
Seq A exon
GTGATCTGTCTTCACTGACCAGCAG
Seq C2 exon
CCCTGGAACCCTCCCCAGCCTGTTGCAGCCTCCTGGCCCTCTTCTTTCCAGCCAGTTAGGATTGCAGCTCCTCCCTGGGGGGGGAGCGCCTCCCACCCTATCAGAGGCCTCTAGTCCCCTAGCCTGCCTGCTACAGAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006209-9-13,9-12,9-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTCAACTTCTTAGCCCT
R:
AGCTGCAATCCTAACTGGCTG
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]