MmuALTA0010629-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127283526-127284212:-
Coord C1 exon
chr10:127284043-127284212
Coord A exon
chr10:127283604-127283942
Coord C2 exon
chr10:127283526-127283603
Length
339 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AATAGAGATGTTTTTGCCAGCAG
3' ss Score
-1.92
Exon sequences
Seq C1 exon
GTGATCTGTCTTCACTGGCCAGCAGCCCTGGAGCCCTCCCCAGCCTGTTGCAGCCTCCTGGCCCTCTTCTTTCCAGCCAGTTAGGGCTGCAGCTCCTCCCTGGGGGGGGAGCGCCTCCCGCCCTGTCAGAGGCTTCTAGTCCCCTAGCCTGCCTGCTACAGAGTCTCCAG
Seq A exon
CAGATCCCTCCAGAGCAGCCAGACGCCCCCTGTCTGCCCCCCGAGAGCCCCGCCTCAGCCCTCGAACCGGAGCCTGCCCGGCCTCCCCTCAGTGCCTTAGCCCCACCCCATGCTTCTCCTGACCCCCCAGTCCCCGAGCTGCTCACTGGGAGGGGGTCAGGGAAACGGGGCCGGAGGGGAGGAGGGGGACTTAGGGGCATTAACGGTGAGACCAGGCCAGGCAGAGGCCGAAAGCCGGGCAGCCGCCGAGAGCCTGGCCGGCTAGCACTCAAGTGGGGGACACGTGGTGGCTTCAATGGACAAATGGAACGGTCCCCAAGAAGGACTCACCATTGGCAG
Seq C2 exon
CATAATGGGGAGCTAGCGGAAGGGGGTGCTGAGCCCAAGGATCCACCCCTTCCTGGGACCCATTCTGAGGACCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-15-22,15-20,15-19-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTGTCTTCACTGGCCA
R:
TAAGGTCCTCAGAATGGGTCCC
Band lengths:
246-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types