MmuALTA0012059-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121650716-121651836:+
Coord C1 exon
chr9:121650716-121650861
Coord A exon
chr9:121651683-121651757
Coord C2 exon
chr9:121651758-121651836
Length
75 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATTTTTTAATATCTATTAAGTTT
3' ss Score
4.13
Exon sequences
Seq C1 exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
Seq A exon
TTTTTGAGAAAAAAAGGAAGAAACCAACCTGTTCAGAAGGCTCGGACTCTTCTTCCCGTTCCTCTTCCTCTTCAG
Seq C2 exon
AGTCCTCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGACATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-14-14,14-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.960
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
A:
NA
C2:
PF105004=SR-25=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGAAAACAGATGCTGCAAGC
R:
GCATGTCTGACTTTTGGCCTC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: