MmuINT0108813 @ mm9
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121650716-121651905:+
Coord C1 exon
chr9:121650716-121650861
Coord A exon
chr9:121650862-121651682
Coord C2 exon
chr9:121651683-121651905
Length
821 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATTTTTTAATATCTATTAAGTTT
3' ss Score
4.13
Exon sequences
Seq C1 exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
Seq A exon
GTAAGAGCCTTTGGAGGATGGGGGGAGTCTGGAACAGAGAGGTGTAAAGCATGTGTGTGGGTAGTGGGAGTGTTGATGCCTCTGTGCTGTGCTGCATCCTCTCCACCAGCAGATGTTTCCAGCTCCTCCTCCTGCTACTACCCAGCTGTCAGCTGATAAGACCTCTCATGCCTGGATTATTGTAGTACCCTCACAGCTGCCTACCTTACCTCTCTCCCTGTTTCCCTATGGTCGTTTGTCAGCAGGCATGTCCTCACTAATTTCTTTGCTCATGCCCTTGGTTTACTTTGGTTTGTATTCAGCAGCTACCAGAGTGATCCTCTTAAGGGACAGGTAATCCACATCCCTCACCCCCCACTCCCCATCCCCACCCCGCACAGACACTACAGTGGTACTCTCAGCACAGAGCCGCAGCTTTCTGTTGTCTTTTCAACATTTTTCCATACTCATTGCCTTCCAGCTACACTGATGTTTATTCAGACACTAGGGACTTTGTGCCTGCCCTCATGTATACTTTAGGTCTCTGTTCCAGGGTAATCTTAAGCTACCTATATCTATATGTATCTCTCTGTTCCCTTGACATTTGTTTATTCTGTCTTAGCTCTCATTACTTGTCACGTTTGCTTAAAATACAGGCTTCATGATGGGTAAGGGCTTGGGCATTATACATAACTGGGGAACAGTTTAGTTGAGTCTATTTTTAGTTTGCTGTTCATGAAGCAATTATATGATAGTCAGCAGTCACAGTTTTTCACTCTGGATGGTGTGTACTGGGCTCAAGTACTGATTTTTTATTTATTTATTTTTTAATATCTATTAAG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACCTGTTCAGAAGGCTCGGACTCTTCTTCCCGTTCCTCTTCCTCTTCAGAGTCCTCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGACATGCTAAAAAGAGACGGAAAGAAATGAGCAGTTCAGAAGAACCGAGGAGGAAGCGCACAGTAAGCCCTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-Nktr:NM_010918:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.960
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
A:
NA
C2:
PF105004=SR-25=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCATGTTGTTTTTGGACTGGT
R:
GCTTCCTCCTCGGTTCTTCTG
Band lengths:
350-1171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: