GgaINT0091029 @ galGal3
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1856365-1857777:+
Coord C1 exon
chr2:1856365-1856510
Coord A exon
chr2:1856511-1857554
Coord C2 exon
chr2:1857555-1857777
Length
1044 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TTGAAATATCTGTTTCTAAGCTT
3' ss Score
4.19
Exon sequences
Seq C1 exon
CGTACACGTTGTCTTTGGACTGGTTATTTCTGGTTTTGAAGTAATAGAACAAATAGAAAATCTGAAAACTGATACTGCCAGTAGACCCTATGCAGATGTACGAGTTATTGACTGTGGGGTGCTTGTTACAAAACCTGCAAAAGACG
Seq A exon
GTAAGCATACGTAAGCTGAAGTTAATTGAATGTTGACATTGCTTTCAGAGTCTAAAAACTATTCCAGCATCTAGAAATCACTATGGTGAATCTATTAAATCTTAATTTAGCTCAAACGAGTCTTATTTAGAGGTTAGAGTAGGCAAGCAAGGCATGGGAAAGGATGTTCTCTGCCCTCAACCTTTGTGCCTTAGAACTTGCATGTCTGCCTCCTCTTCTCCTTAATTAATCTTTGTGGGTAATGCTGTAAACTCGAAAAGCAATTAGAAGTTATTTTTCAGAGCTTGAAACATTGTTGTCCAGTCAGAAGCTTTTCTTGATGGGGGATTTTGTACCGTTTCTGAAGGCTTATTTTAATGTCAATATGTCTGTAAAGGAAGTCTATGTGATTTTTATGAGAATTCATAGGAAATAAATGATCTTAGGTATGTCTTTAGGCAATTATTGTGAAGTGTGGATTGTTTTGAGGTAAGATTGTTGGTTTTTTTCACTTCAGTTTTTTGTTTCTTCAAGGATAGTGGGGGTTGTTTTTTTTTTTTGTTTTTTTTTTCTTTTTTGTCCTGTAGAGAGGAAAGAGCCTAAAGGAGGAGGATGCAGAAAGAACAGGATACCAAAACTTGTGACATAAGTTCATAGAATCCTTAGAGTTGGAAGGGACCTTTAAAGGTCATCTGGTCCAACTCCCCAACATCTGAGTGTTAACTCCACTTACAGACCTCCAGTATATGCCTTTAAAGTGCTTTGGTGTTTCACTGATGCATCTTGCAGTAGTTGTGCATAGAAATTCTTACAGTTCACTTGATGGCAAACGAAGAGATTTTTTTACAACCATCCTTATTGGAAAAAATGTGTGATCTTATTGATAGTGCTTTATACTGGACACAATAAAATTCATGTAATTGTTCTTTAACAAACCTCGCTGTGAAAGGTTTACACCCTGAGCTCCTGGAGAAGTATGTGTTTTTACGTATGTAAAATTGTATACCTTCTGTATATATGCACAATGCTTGTACACACTATAAATTTGAAATATCTGTTTCTAAG
Seq C2 exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.960
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTTGTCTTTGGACTGGT
R:
TTTGAGGCTCGCTTGCTTCTC
Band lengths:
357-1401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]