RnoINT0101359 @ rn6
Intron Retention
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130381037-130382189:+
Coord C1 exon
chr8:130381037-130381182
Coord A exon
chr8:130381183-130381966
Coord C2 exon
chr8:130381967-130382189
Length
784 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTTTAAATATCCATTAAAAGTTT
3' ss Score
3.92
Exon sequences
Seq C1 exon
GGTTCATGTTGTCTTTGGACTGGTTATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACGGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGAGTGCTTGCCACAAAGTTGACAAAAGATG
Seq A exon
GTAAGAGCTTTGGAGGGTGGAGGATCTAGGGCAGAGAGGTGTAAAGAAAGCATGTGTGGATAGTGGGAGCATTGGTGCCTCTGTGCTATGCTTTATCCCCTCCGACAGCAGTCCTCCTCCTCGCTGCTACCCAGCTGCCAGCTGATCCAGGCCCTCTCAGGCCTGGATTATTGCCTTTCTCTCATAGCTGTCTACCTTACCTCTCTCCTGTTTTCCTATGATGATTTATCAGCAGGAGTGTCCCCACTGGTTTCCTTGCTTATGGCCTTGTTTTACTTTGGTTTGTCTTTAGCAGCAACCAGAATGATCCTCTTAAGGCACACGTAATCCATATCCCCCTGCACAGATACCACAGAGGCCCGTAGCTCTCTGTTGTCTTTCCGACTTTTTCTTCCCATACTCATTGCCTTCTAGCTATACTGATTATTATTCAGACACTTGGGGACTTTGTGCCTGCTGCCGTCATGTATAGAACATTCTTTGTTAAGGCATCTGTGTGACCCCTCCCTATTTTAGGTCTCTGTTCCAGTGTAATCTTAGGCTACCCGTGGCGTACATTTGTGTTCCCTGGACATTTGTTTATTCTGTCACAATTACTTAAAATAATAGACGTCGTGGTGTGTGAGGGCAATATCTAACTGGGGAAGAGTGTAGTCTAGTCTTGTGTTAGTTTGCTGTTCATGAAGCAGCTATGACAGTCGGCAGTCAGTTTTTCACTCTGGATGGTGTGTACTGGACTCGAGTACTAATGTGTCATTTTTTTTTTTTAAATATCCATTAAAAG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACACATTCAGAAGACTCGGACTCTTCTTCCAACTCCTCTTCCTCTTCAGAGTCATCCTCAGAAAGCGAAGTTGAACGAGAGAGAATCAGAAGGAGGAGACATAAGAGGAGGCCAAAAGTCAGACATACTAAAAAGAGACGGAAAGAGATGAGCGGTTCAGAGGAACTGAGAAGGAAGCGCACAGTGAGCCCTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128:ENSRNOT00000071152:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(25.5=80.0),PF105004=SR-25=PU(19.5=52.0)
A:
NA
C2:
PF105004=SR-25=FE(55.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCATGTTGTCTTTGGACTGG
R:
GCGCTTCCTTCTCAGTTCCTC
Band lengths:
352-1136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]