BtaINT0102037 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15393204-15394518:+
Coord C1 exon
chr22:15393204-15393349
Coord A exon
chr22:15393350-15394295
Coord C2 exon
chr22:15394296-15394518
Length
946 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TTATTACTATTTATTAAAAGTTT
3' ss Score
4.35
Exon sequences
Seq C1 exon
GGTGCATGTTGTCTTTGGACTAGTTATTTCTGGTTTTGAAGTGATCGAACAAATTGAAAATCTGAAAACTGATGCTGCAAGTAGACCGTATGCAGATGTACGAGTTATTGACTGCGGGGTGCTTGCCACAAAGTCAGCAAAAGACG
Seq A exon
GTAAGAGTGTTTTGAGTGCAGAGGGAGCTAGGATACAGGTAACACTTGTTGAAGACTATAACTTAAAGATACCTCCTAGATTTCAGTAGTGGAAGAAACTCCTACGAGTAATATACCAATATCCCTGATGCCTCCATATCATACCCTGTATTCAATCCATCAGAAATCTTTCCAACTCTGACTTTGTCTTTTTACTTCCCCTGTTGTCACCTTGGTCCAAACCCAAATATCTTTTACCTGGGTTATTCCAATAGCCTCACCACAGTTCACTTTGCCTCTATCATTGCTTCTGTATAATCTTTTCTCAGTAATGATAGCTTCGTAACTGGTCTTCTTGCTTCCACCTGACCCTCTACAGTCCTCAGCAGCAACCAAAGCCAGCTTCTCCAAGGGTTCCCTCTCTGTCAACCAAAACTAAAGTCTTTACTGTGGTTTGTAAGGGATTCTGGCTTTTTGCTGTTTCTCTAATCTCTCCATATTCATTGTCTTCCCAGCAGTGTTAATCTTTACTCAAACATGCCAGACACTTGGGGACTTTGTGCTAGCTGTTCCTTCTATCTGGAATACTCTTTGTTCAGATACCTGCATGACCCCTGTCCCTCGCTTCTTTCAGGTCTCTGCTCAAATGTTATCTTAAATTACCTTGACTTGCCTTGTTCCCTTTACTCTGTGTTTTCCTCCCTCTTCTTTAAGCATTTATCATTTGTTATATTAGGTAGTTACTTATTTTCTTATCTGACTGAACTAATATATAAACTTCACGAGGGCTTTGTTACCTTACAATCTCACCAACAAGTTGTATTATCAACTTGAAAAAAAGTTTATTTAAATTTTTAGTGGGCTTTATATAAAACATGTTTTATAATACTTGGTAATCATTTCTTTTTACTCTGAAAGGTGGGCAGTGAAATCCAGTACTAATACTTTTATTACTATTTATTAAAAG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAGCCAACTCATTCAGAAGTCTCGGATTCCTCTTCCAATTCCTCATCCTCTTCAGAATCATCCTCAGAAAGTGAAATTGAACATGAGAGAAGCAGAAGAAGGAAACATAAGAGGAGACCGAAAGTTAAACATTCTAAAAAGAGACGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGAAATAAACATATAATAAGCCCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795:ENSBTAT00000030863:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(21.1=56.0)
A:
NA
C2:
PF105004=SR-25=FE(55.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCATGTTGTCTTTGGACT
R:
TCTTGGCTCTTCTGAACTGCT
Band lengths:
343-1289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]