DreINT0104762 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20504510-20505374:-
Coord C1 exon
chr24:20505229-20505374
Coord A exon
chr24:20504712-20505228
Coord C2 exon
chr24:20504510-20504711
Length
517 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TTATCTTTTGTTTTCCGTAGTTC
3' ss Score
10.05
Exon sequences
Seq C1 exon
AGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACG
Seq A exon
GTAAGCTTGTTTATGTGTGCAAGAGGAATTTTGGCTTCAGACCTGTTGCCTCTTACTACATTGTCTTAACTTGTCTTTAACCAATGGAGAGTATTTTAATCTCCACATCGGTTGCATTGTGGGGTAAATATGGTGTCTAAAAATAGAAAAGGAAAAGATCCCAAAACAAAATGGCAGCTCTTTGAAAGACTGCAAAGCCCATGTTTAATACATGTACTTACACTGTCTTCTAACCAGGCTTGATGTGACAAAGTGTCAAGTAACAAATCGCATCTCTTCTATGTTTTTCCTTTAACAAGTGATGTACAACGTCAGTCACGGTGTCTATTTTGTCATTCTAATATTAAATCTGTCAAATCTACCAAAATCCTGCTCCCATCTTAAATATTGTGTAATGGTTTGTTCTTTATATATTGTTTATTTTGATCCATGTACAAACATCTATAGTTCAAATTAATTACATACTGATGAAAAATGTTTTTTAGATAACTAATAGATTATCTTTTGTTTTCCGTAG
Seq C2 exon
TTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.853
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGTCTTCGGGCTGGTC
R:
CTTGCGGGTCCTGCAGTTTTA
Band lengths:
343-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]