MmuALTA0012426-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32038102-32039476:+
Coord C1 exon
chr2:32038102-32038172
Coord A exon
NA
Coord C2 exon
chr2:32039323-32039476
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCACTTGTTTTTTTCAGCAGTCA
3' ss Score
5.81
Exon sequences
Seq C1 exon
GTTTTGGGTCTAGTAATACTGGTTCTGTGTTTGGCCAGGCAGCCAACACTGGTGGGTCAGTCTTTGGCCAG
Seq A exon
NA
Seq C2 exon
TCATCCACTTCCAGTGGTGGCGTGTTTGGGTCTGGAAATGCTACAAGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACCCCTTCAGCTCAGCCGGTGGGGGCTTTGGATCTACAGCTGCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-64-69,64-68-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTTCTGTGTTTGGCCAG
R:
GCCCCCTCTTGTAGCATTTCC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types