RnoALTA0027317-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11050035-11057803:+
Coord C1 exon
chr3:11050035-11050105
Coord A exon
NA
Coord C2 exon
chr3:11057650-11057803
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCCATTTGTTTTTTTAGCAGTCA
3' ss Score
5.01
Exon sequences
Seq C1 exon
GTTTTGGGTCTAGTAATACTGGTTCTGTGTTTGGTCAGGCAGCCAGTAGCGGTGGGTCAGTCTTTGGCCAG
Seq A exon
NA
Seq C2 exon
TCATCCACTTCCAGTGGCAGCGTGTTTGGGTCTGGAAATGCTACAAGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGGTCTACGCCTACACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393-33-40,33-39-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTGTGTTTGGTCAGGCA
R:
GCCCCCTCTTGTAGCATTTCC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]