Special

MmuALTA0012971-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:113618530-113625990:+
Coord C1 exon
chr8:113618530-113618726
Coord A exon
chr8:113625714-113625760
Coord C2 exon
chr8:113625761-113625990
Length
47 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GATTTTTTTTTTCTTTCTAGTTC
3' ss Score
9.74
Exon sequences
Seq C1 exon
TTACCCTTGCCGCGGGCCGTAAAGCGCGGAAGGTCGCAGGCCCCCCGCGGTCCCGGAACTCTGCGCTCCGCGTCCCGCCCCGTCCCCATGCCCTGGCCCCCTTTCCGGCCGGCGCAGACCCTCTTCAGCGGCTGGGCTGCCCTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGTCGCGGGCCCGTGAG
Seq A exon
TTCATATTCTTTGGATCTTCTCAGCTGAGTGAAAACGTATCTTCCAG
Seq C2 exon
GTGGTGATGCTTTACCGGTTGCTCTCTATTGTGCAAAGACAAAGGACTAGCCCAGGATGGCAGACCTGGTCATCAGCGAGAAGCAGCACGTCCACTGCGGAGGCACATTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGAGGTGGAATCATGGGTACATCCGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.093
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0126619=DAO=PU(31.1=42.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000046639





     
                   









    
Main Skipping Isoform:
ENSMUSP00000117570





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000121325
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:70154362-70154363 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:1940759-1940760 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTGGGCTGCCCTTCACTTC

				
R: 
TTCTCGCTGATGACCAGGTCT

				
Band lengths: 
148-195

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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