MmuALTA0012971-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111094630-111102090:+
Coord C1 exon
chr8:111094630-111094826
Coord A exon
chr8:111101814-111101860
Coord C2 exon
chr8:111101861-111102090
Length
47 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GATTTTTTTTTTCTTTCTAGTTC
3' ss Score
9.74
Exon sequences
Seq C1 exon
TTACCCTTGCCGCGGGCCGTAAAGCGCGGAAGGTCGCAGGCCCCCCGCGGTCCCGGAACTCTGCGCTCCGCGTCCCGCCCCGTCCCCATGCCCTGGCCCCCTTTCCGGCCGGCGCAGACCCTCTTCAGCGGCTGGGCTGCCCTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGTCGCGGGCCCGTGAG
Seq A exon
TTCATATTCTTTGGATCTTCTCAGCTGAGTGAAAACGTATCTTCCAG
Seq C2 exon
GTGGTGATGCTTTACCGGTTGCTCTCTATTGTGCAAAGACAAAGGACTAGCCCAGGATGGCAGACCTGGTCATCAGCGAGAAGCAGCACGTCCACTGCGGAGGCACATTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGAGGTGGAATCATGGGTACATCCGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.093
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(31.1=42.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTGCCCTTCACTTC
R:
TTCTCGCTGATGACCAGGTCT
Band lengths:
148-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types