MmuALTA0012971-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111094630-111102090:+
Coord C1 exon
chr8:111094630-111094826
Coord A exon
NA
Coord C2 exon
chr8:111101861-111102090
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
AGTGAAAACGTATCTTCCAGGTG
3' ss Score
5.21
Exon sequences
Seq C1 exon
TTACCCTTGCCGCGGGCCGTAAAGCGCGGAAGGTCGCAGGCCCCCCGCGGTCCCGGAACTCTGCGCTCCGCGTCCCGCCCCGTCCCCATGCCCTGGCCCCCTTTCCGGCCGGCGCAGACCCTCTTCAGCGGCTGGGCTGCCCTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGTCGCGGGCCCGTGAG
Seq A exon
NA
Seq C2 exon
GTGGTGATGCTTTACCGGTTGCTCTCTATTGTGCAAAGACAAAGGACTAGCCCAGGATGGCAGACCTGGTCATCAGCGAGAAGCAGCACGTCCACTGCGGAGGCACATTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGAGGTGGAATCATGGGTACATCCGTGGCCTATCACCTCTCCAAAATGGGATGGCAAGATATTGTCCTTTTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-0-3,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.093
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(31.1=42.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTGCCCTTCACTTC
R:
TTCTCGCTGATGACCAGGTCT
Band lengths:
148-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types