RnoALTA0028598-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43142505-43149210:-
Coord C1 exon
chr19:43149028-43149210
Coord A exon
NA
Coord C2 exon
chr19:43142505-43142667
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGAAAACATATATCTTCCAGGTG
3' ss Score
7.81
Exon sequences
Seq C1 exon
CGGGCCGTAAAGCGCGGAAGGTCGCGGGCCCCTGCGGTCCCGGAACTTTGCGCTCTGCGTCCCGCCCCCTCCCCATGCCCTGTCCCCTTTCCGGCCCGCACAGACCCTCTTCAGCGGCTGTGCTGCCCTTCACTTCCGCCGGGCGTTGTTGAGCTCGCTGCCCGCAAGTTGCGGGCCCTTGAG
Seq A exon
NA
Seq C2 exon
GTGGTGATGCTTTACCGGTTGCTGTCTATTGTCCAAAGACAAAGAACTAGCCCAGGATGGCAGACCTGGTCATCGGCAAGAAGCAGCACGTCCGCTGCCGAGGCGCAGTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGGGGTGGAATCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(39.0=42.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGCCCTTCACTTCC
R:
TTCTTGCCGATGACCAGGTCT
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]