RnoALTA0028598-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43142505-43149210:-
Coord C1 exon
chr19:43149028-43149210
Coord A exon
chr19:43142668-43142711
Coord C2 exon
chr19:43142505-43142667
Length
44 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGATTTTTTTTTCTTTCTAGTTG
3' ss Score
10.07
Exon sequences
Seq C1 exon
CGGGCCGTAAAGCGCGGAAGGTCGCGGGCCCCTGCGGTCCCGGAACTTTGCGCTCTGCGTCCCGCCCCCTCCCCATGCCCTGTCCCCTTTCCGGCCCGCACAGACCCTCTTCAGCGGCTGTGCTGCCCTTCACTTCCGCCGGGCGTTGTTGAGCTCGCTGCCCGCAAGTTGCGGGCCCTTGAG
Seq A exon
TTGTATTTTTGGATCTTAGCTGAGTGAAAACATATATCTTCCAG
Seq C2 exon
GTGGTGATGCTTTACCGGTTGCTGTCTATTGTCCAAAGACAAAGAACTAGCCCAGGATGGCAGACCTGGTCATCGGCAAGAAGCAGCACGTCCGCTGCCGAGGCGCAGTCTATTGCTCTGCCTGCCCAGGCCCAGGTGGTCATCTGTGGGGGTGGAATCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(39.0=42.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGCCCTTCACTTCC
R:
TTCTTGCCGATGACCAGGTCT
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]