MmuALTA0013122-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:117866684-117876036:+
Coord C1 exon
chr11:117866684-117867205
Coord A exon
chr11:117875888-117875960
Coord C2 exon
chr11:117875961-117876036
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGCACTTCCTTTTCCCGCAGGCC
3' ss Score
12.57
Exon sequences
Seq C1 exon
AGCAGCGAACAAGCGGGTCATGGACGTCATCCACTCGGCCAGGGCCCGGCAGCAGATGCTGCACGCACAGACCTTTCACAGTGATTCTCTGCTGAGCCAGGAAGAGGCTGCAGCTGCCGGGGACCGGAGGCCAGCGCCCGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATTGATGAGATAGTCACGGAGACGCTGCTGACGGAGGCTGAGCGCGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCTGAGTATCAGATCCTTCTAGCCTCACCGGAGGTGAATGGCTTCTTTGGGGCTAAGGGCGTGGCGGGCGCCATCCCAGCCGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAGGTGTGTAGCCTGGGGCAGCAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGGGGTTGGACCTTTCATGCCAAAG
Seq A exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAG
Seq C2 exon
GTCAGTTCACCGGGACCTGGAAGCCCAGATTGCCATCGTGACGGAGAGCCGGTCCCTGCAGCAGCAGCTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715-11-17,11-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATGGCTTCTTTGGGGCT
R:
CTTCCAGGTCCCGGTGAACT
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: