MmuALTA0013133-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024193 | Phf1
Description
PHD finger protein 1 [Source:MGI Symbol;Acc:MGI:98647]
Coordinates
chr17:26933127-26934368:+
Coord C1 exon
chr17:26933127-26933534
Coord A exon
chr17:26934194-26934285
Coord C2 exon
chr17:26934286-26934368
Length
92 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
ACCATCCTATCTTGGAATAGGCC
3' ss Score
8.03
Exon sequences
Seq C1 exon
AGAAGGTTATTTCCTGCTGACCCAGAGCAAGCCTCCCATCCGAAAAAGGGGCTGCAGGGATTTCCTCGACCTCCGCGACCGGCCGCGCCCCCAACAGCGCAGCGCCCTCCGGGCCCGCTGGAGGTGAGGGAGGTGCTGCCTGCCCGTCCCTCTGTCGTCTCCTCCCCCTGGTGCTCCCCACCCTCCACTCTCCTCCCTCCTTCTGTCGACTCCTCCTGCCGCTGCTGCTGCTTTGGCTGCTGCGTCATACGCCCCAGAGCCGCCAGGACGGAGGGGCTGGGCCCGGGGACCCCCTGGCCTCCGCCTGCACGCCCCCCGGCGCTCACACTCAGTCTTCCCGCACCGGAGACTCATCCAGGTCTCTTGAGTCTGACCCTACCTGGCTTCCAGCTGCCCCGGCTGTCACCG
Seq A exon
GCCCCCCCAGGATGCAATGGCGCAGCTCCCCCGGCTGAGCCGTTTGGGTGCCCCCTCTCTCTGGGATCCAGCTTCCCCTGCTCCCACCTCAG
Seq C2 exon
GCCCCAGACCTCGGCTTTGGGAAGGCCAAGATGTGCTGGCCAGATGGACTGATGGGCTGCTGTACTTGGGTACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024193-4-3,4-2,4-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.226
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF150571=DUF4537=PU(33.3=35.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATACGCCCCAGAGCCG
R:
CAAAGCCGAGGTCTGGGG
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types