Special

MmuALTA0014035-2/2 @ mm10

Alternative 3'ss

Gene
Description
preferentially expressed antigen in melanoma like 7 [Source:MGI Symbol;Acc:MGI:2156391]
Coordinates
chr2:87492135-87496890:-
Coord C1 exon
chr2:87496847-87496890
Coord A exon
chr2:87492194-87492444
Coord C2 exon
chr2:87492135-87492193
Length
251 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCTCCTAATTTTTCCCCCAGGAT
3' ss Score
10.79
Exon sequences
Seq C1 exon
AAGACACTCAGATCCCGGGACTCTGTCACCTGTATCCTAGTCAG
Seq A exon
GATCATCTCCCTAAAGATCTGTCAGAATGGTCAGTGCCCCACCCACACTCCAGGATCAGGCTTTCAGGAGCCTGGTGAGGAATGAAGTATTGACCGTCTCTGATGCGGAGTGCCTAATAAGGGAATTCTTCCCACCTCTGTTCAAGGAGGCCAGCACTCAAAAAAAACCAAAGACAATTATGATCCTGGTGGAGCACTGGCCCTACCCTTGCCTTCATGTTGGGTTGTTGATTGATAAACCCAACTTTCAG
Seq C2 exon
ATCTTCCAGGCTATACTGGATGGAGTAGACACATGGCTGAAACGGAAGTATCGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025839-0-6,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types