Special

MmuEX0036925 @ mm10

Exon Skipping

Gene
Description
preferentially expressed antigen in melanoma like 7 [Source:MGI Symbol;Acc:MGI:2156391]
Coordinates
chr2:87490824-87497093:-
Coord C1 exon
chr2:87496847-87497093
Coord A exon
chr2:87492135-87492444
Coord C2 exon
chr2:87490824-87491405
Length
310 bp
Sequences
Splice sites
3' ss Seq
TCTCCTAATTTTTCCCCCAGGAT
3' ss Score
10.79
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAAGTGAGTCCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAAACAAAACAAAACAAAAAAACCATCCAATCAGATGGCAGCATTTATCAGTGGTGGTGCTGATAAAAGGCAAGAAGAAAAAGATCTGTAAAGGTGTCATTGGAGCCAGAGAAGACACTCAGATCCCGGGACTCTGTCACCTGTATCCTAGTCAG
Seq A exon
GATCATCTCCCTAAAGATCTGTCAGAATGGTCAGTGCCCCACCCACACTCCAGGATCAGGCTTTCAGGAGCCTGGTGAGGAATGAAGTATTGACCGTCTCTGATGCGGAGTGCCTAATAAGGGAATTCTTCCCACCTCTGTTCAAGGAGGCCAGCACTCAAAAAAAACCAAAGACAATTATGATCCTGGTGGAGCACTGGCCCTACCCTTGCCTTCATGTTGGGTTGTTGATTGATAAACCCAACTTTCAGATCTTCCAGGCTATACTGGATGGAGTAGACACATGGCTGAAACGGAAGTATCGCCCCAG
Seq C2 exon
GATGGGAAGGCTTAAAAAGGTTGACTTCAGGGATGCACAGCATCATGCTTCCTTAGATATGCAGGATGAGAGAGAGGGTAGAGACTACTTAGTAGGAACTTTGCCTAAGAAGCAAATAGTGGAGGACCACTCAAGAACAAGGAAAGAGCGTTTGAAGCTGTTCCATGACCTTTCCTTTATGTCTTCTCTGCATGAGGATAAACACCAAACACTGTTATTGGAGTGGGCAAAGGAAAGGACGAGTTTCCTGCATCTGTGCTGTGAGAAGTTGGAGATAGGAGCAGTAGAAGTGTCTAAGGTCAGGAATGTATTAAAATTTCTACAGCCAGAGCTCATCAAGGAGTTGAAACTGAATACAGTGGGGAATCTGTCCAAACTGGCAAAATTCGTACCTTTCATTAGAAAGATGAGAAACCTTCAGAAACTCATGCTAGTACGCACCTTTGGAACAAGGACTTTCACTCAAGAGGAGAAGCAGAACATCAGCAAGATCATTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025839_MULTIEX1-3/4=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact

In the CDS, with uncertain impact

Show structural model
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.005
Domain overlap (PFAM):

C1:
NA
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGCTGATAAAAGGCA
R:
GTCCTTTCCTTTGCCCACTCC
Band lengths:
344-654
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types